API Reference

KmerArray{N, K, T <: Real, A <: AbstractArray{T, K}} <: StaticArray{NTuple{K, N}, T, K}

• N is the alphabet size
• K is the K-mer size
• T is the element type
• A is the array type

count_kmers!(kmer_array, sequence; reset=true)

Requires method axis_index(::KmerArray{N}, ::eltype(sequence)) where N to be defined

count_kmers(sequence, [N,] K, T=Int, zeros=zeros)